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First published January 9, 2007 as JAMIA PrePrint; doi:10.1197/jamia.M1953
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J Am Med Inform Assoc. 2007;14:164-174. DOI 10.1197/jamia.M1953.
© 2007 American Medical Informatics Association


Application of information technology

A Comparative Evaluation of Full-text, Concept-based, and Context-sensitive Search

Robert Moskovitcha,*, Susana B. Martins, MD, MScb,c, Eytan Behiri, MDd, Aviram Weiss, MDe and Yuval Shahar, MD, PhDa

a Medical Informatics Research Center, Department of Information Systems Engineering, Ben Gurion University, Beer Sheva, Israel
b Stanford University, Palo Alto, CA
c VA Palo Alto Heath Care Center, Palo Alto, CA
d E&C Medical Intelligence Inc., New York, NY
e Medical Corps, Israel Defense Force, Israel.

* Correspondence and reprints: Robert Moskovitch, Medical Informatics Research Center, Department of Information Systems Engineering, Ben Gurion University of the Negev, Israel, P.O.B. 653, Beer Sheva 84105, Israel. (Email: robertmo{at}bgu.ac.il).

Received for publication: 08/31/05; accepted for publication: 12/11/06.

Objectives: Study comparatively (1) concept-based search, using documents pre-indexed by a conceptual hierarchy; (2) context-sensitive search, using structured, labeled documents; and (3) traditional full-text search. Hypotheses were: (1) more contexts lead to better retrieval accuracy; and (2) adding concept-based search to the other searches would improve upon their baseline performances.

Design: Use our Vaidurya architecture, for search and retrieval evaluation, of structured documents classified by a conceptual hierarchy, on a clinical guidelines test collection.

Measurements: Precision computed at different levels of recall to assess the contribution of the retrieval methods. Comparisons of precisions done with recall set at 0.5, using t-tests.

Results: Performance increased monotonically with the number of query context elements. Adding context-sensitive elements, mean improvement was 11.1% at recall 0.5. With three contexts, mean query precision was 42% ± 17% (95% confidence interval [CI], 31% to 53%); with two contexts, 32% ± 13% (95% CI, 27% to 38%); and one context, 20% ± 9% (95% CI, 15% to 24%). Adding context-based queries to full-text queries monotonically improved precision beyond the 0.4 level of recall. Mean improvement was 4.5% at recall 0.5. Adding concept-based search to full-text search improved precision to 19.4% at recall 0.5.

Conclusions: The study demonstrated usefulness of concept-based and context-sensitive queries for enhancing the precision of retrieval from a digital library of semi-structured clinical guideline documents. Concept-based searches outperformed free-text queries, especially when baseline precision was low. In general, the more ontological elements used in the query, the greater the resulting precision.







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Copyright © 2007 by the American Medical Informatics Association.